If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ), 'gf_id' => 'HOM05D000805', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000805' ), 'data_identifier' => 'HOM05D000805', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000805', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '732', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16390' => 'bna', 'A01p35870' => 'bna', 'A02p35580' => 'bna', 'A03p03360' => 'bna', 'A03p03370' => 'bna', 'A03p03380' => 'bna', 'A03p40720' => 'bna', 'A03p55790' => 'bna', 'A04p13450' => 'bna', 'A04p20090' => 'bna', 'A05p31050' => 'bna', 'A07p20260' => 'bna', 'A08p21280' => 'bna', 'A09p03480' => 'bna', 'A10p07910' => 'bna', 'Aa31LG10G4940' => 'aar', 'Aa31LG2G5010' => 'aar', 'Aa31LG3G7740' => 'aar', 'Aa31LG5G9790' => 'aar', 'Aa31LG7G10490' => 'aar', 'Aa31LG8G5430' => 'aar', 'Aa31LG9G1190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.466' => 'aag', 'Actinidia01042' => 'ach', 'Actinidia01214' => 'ach', 'Actinidia13613' => 'ach', 'Actinidia31770' => 'ach', 'Actinidia33096' => 'ach', 'Actinidia33335' => 'ach', 'Actinidia35074' => 'ach', 'Ah.02g110750' => 'amhyb', 'Ah.07g207520' => 'amhyb', 'Ah.11g047180' => 'amhyb', 'Ah.13g065760' => 'amhyb', 'Ah.16g103190' => 'amhyb', 'AL3G10580' => 'aly', 'AL3G31880' => 'aly', 'AL451U10010' => 'aly', 'AL4G17840' => 'aly', 'AL5G17080' => 'aly', 'AL7G28010' => 'aly', 'AL7G49410' => 'aly', 'AL8G25490' => 'aly', 'Aqoxy3G00383' => 'aox', 'Aqoxy3G02727' => 'aox', 'Aqoxy7G00852' => 'aox', 'Aqoxy7G01357' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GFBT7E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1YYK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YSQ5WX' => 'arhy', 'AT1G48990' => 'ath', 'AT2G25890' => 'ath', 'AT3G01570' => 'ath', 'AT3G18570' => 'ath', 'AT3G27660' => 'ath', 'AT4G25140' => 'ath', 'AT5G07571' => 'ath', 'AT5G40420' => 'ath', 'AT5G51210' => 'ath', 'ATR0053G013' => 'atr', 'ATR0057G111' => 'atr', 'ATR0585G036' => 'atr', 'ATR0705G219' => 'atr', 'Atru.chr1.921' => 'acertr', 'Atru.chr6.2284' => 'acertr', 'Atru.chr9.2549' => 'acertr', 'Atru.chr9.743' => 'acertr', 'AUR62002243' => 'cqu', 'AUR62008167' => 'cqu', 'AUR62012221' => 'cqu', 'AUR62022853' => 'cqu', 'AUR62036943' => 'cqu', 'AUR62040213' => 'cqu', 'BcaB03g12456' => 'bca', 'BcaB04g17374' => 'bca', 'BcaB04g18991' => 'bca', 'BcaB04g19445' => 'bca', 'BcaB05g21609' => 'bca', 'BcaB06g25905' => 'bca', 'BcaB06g27501' => 'bca', 'BcaB06g29635' => 'bca', 'BcaB06g29636' => 'bca', 'BcaB07g30150' => 'bca', 'BcaB08g35479' => 'bca', 'BcaC01g03690' => 'bca', 'BcaC01g04525' => 'bca', 'BcaC03g17477' => 'bca', 'BcaC04g20722' => 'bca', 'BcaC04g23893' => 'bca', 'BcaC04g23894' => 'bca', 'BcaC04g23895' => 'bca', 'BcaC05g28600' => 'bca', 'BcaC06g32835' => 'bca', 'BcaC07g37088' => 'bca', 'BcaC07g38176' => 'bca', 'BcaC08g43105' => 'bca', 'BcaC08g44454' => 'bca', 'BcaC09g48815' => 'bca', 'BcaC09g50805' => 'bca', 'BcaNung04003' => 'bca', 'BolC1t01985H' => 'bol', 'BolC1t04527H' => 'bol', 'BolC2t06281H' => 'bol', 'BolC2t11502H' => 'bol', 'BolC3t12915H' => 'bol', 'BolC3t12917H' => 'bol', 'BolC3t17254H' => 'bol', 'BolC4t26321H' => 'bol', 'BolC4t27103H' => 'bol', 'BolC5t33433H' => 'bol', 'BolC6t37105H' => 'bol', 'BolC7t45893H' => 'bol', 'BolC8t47257H' => 'bol', 'BolC8t48598H' => 'bol', 'BolC9t53291H' => 'bol', 'BolC9t56887H' => 'bol', 'BraA01t01594Z' => 'bra', 'BraA01t03666Z' => 'bra', 'BraA02t04923Z' => 'bra', 'BraA02t08560Z' => 'bra', 'BraA03t09687Z' => 'bra', 'BraA03t09689Z' => 'bra', 'BraA03t13229Z' => 'bra', 'BraA03t14647Z' => 'bra', 'BraA04t17003Z' => 'bra', 'BraA04t17591Z' => 'bra', 'BraA05t21947Z' => 'bra', 'BraA07t29727Z' => 'bra', 'BraA08t32453Z' => 'bra', 'BraA08t34077Z' => 'bra', 'BraA09t35986Z' => 'bra', 'BraSC35t46007Z' => 'bra', 'C01p20540' => 'bna', 'C01p45660' => 'bna', 'C02p03190' => 'bna', 'C02p54410' => 'bna', 'C03p03800' => 'bna', 'C03p03820' => 'bna', 'C03p49560' => 'bna', 'C04p47220' => 'bna', 'C05p47030' => 'bna', 'C06p19050' => 'bna', 'C07p54070' => 'bna', 'C08p04520' => 'bna', 'C09p03710' => 'bna', 'C09p39880' => 'bna', 'CAN.G1148.6' => 'can', 'CAN.G174.20' => 'can', 'CAN.G1856.8' => 'can', 'CAN.G305.64' => 'can', 'CAN.G338.13' => 'can', 'CAN.G338.15' => 'can', 'CAN.G438.110' => 'can', 'CAN.G473.6' => 'can', 'CAN.G62.16' => 'can', 'CAN.G700.15' => 'can', 'CANSAT21G1803' => 'cansat', 'CANSAT56G2119' => 'cansat', 'CANSAT56G2548' => 'cansat', 'CANSAT80G0440' => 'cansat', 'CARHR039000' => 'chi', 'CARHR075360' => 'chi', 'CARHR093950' => 'chi', 'CARHR115320' => 'chi', 'CARHR149080' => 'chi', 'CARHR149090' => 'chi', 'CARHR232530' => 'chi', 'CARHR256810' => 'chi', 'CARHR261590' => 'chi', 'Carub.0001s3816' => 'cru', 'Carub.0003s0050' => 'cru', 'Carub.0003s1835' => 'cru', 'Carub.0004s0571' => 'cru', 'Carub.0005s0610' => 'cru', 'Carub.0006s0654' => 'cru', 'Carub.0006s0655' => 'cru', 'Carub.0007s1589' => 'cru', 'Carub.0007s3517' => 'cru', 'Carub.0008s1125' => 'cru', 'Ca_02532_v3' => 'car', 'Ca_02660_v3' => 'car', 'Ca_04153_v3' => 'car', 'Ca_08362_v3' => 'car', 'Ca_10416_v3' => 'car', 'Ca_15641_v3' => 'car', 'Ca_21952_v3' => 'car', 'Cc00_g09240' => 'ccan', 'Cc02_g04750' => 'ccan', 'Cc04_g11860' => 'ccan', 'Cc07_g01780' => 'ccan', 'Cc08_g11890' => 'ccan', 'Cc08_g11900' => 'ccan', 'CDE02G3253' => 'cde', 'CDE04G1920' => 'cde', 'CDE06G1043' => 'cde', 'CDE06G2136' => 'cde', 'CDE07G0568' => 'cde', 'CDE09G0809' => 'cde', 'Cfa007378' => 'cfa', 'Cfa013392' => 'cfa', 'Cfa013591' => 'cfa', 'Cfa019183' => 'cfa', 'Ciclev10006168m.g' => 'ccl', 'Ciclev10009815m.g' => 'ccl', 'Ciclev10016997m.g' => 'ccl', 'Ciclev10022589m.g' => 'ccl', 'CiPaw.03G042800' => 'cil', 'CiPaw.04G028100' => 'cil', 'CiPaw.07G184600' => 'cil', 'CiPaw.07G201600' => 'cil', 'CiPaw.08G042000' => 'cil', 'CiPaw.11G022100' => 'cil', 'CiPaw.12G029700' => 'cil', 'CiPaw.15G125600' => 'cil', 'ClCG01G004720' => 'cla', 'ClCG01G013390' => 'cla', 'ClCG06G015070' => 'cla', 'ClCG07G017010' => 'cla', 'ClCG08G012050' => 'cla', 'ClCG09G019230' => 'cla', 'ClCG10G013940' => 'cla', 'COL.COLO4_21008' => 'col', 'COL.COLO4_22703' => 'col', 'COL.COLO4_29100' => 'col', 'COL.COLO4_30152' => 'col', 'COL.COLO4_37336' => 'col', 'Cpa.g.sc110.15' => 'cpa', 'Cpa.g.sc13.249' => 'cpa', 'Cpa.g.sc13.63' => 'cpa', 'Cpa.g.sc1868.2' => 'cpa', 'CsaV3_1G003570' => 'csa', 'CsaV3_1G008740' => 'csa', 'CsaV3_2G030640' => 'csa', 'CsaV3_3G042750' => 'csa', 'CsaV3_4G004230' => 'csa', 'CsaV3_5G004910' => 'csa', 'CsaV3_5G027160' => 'csa', 'CSS0006930' => 'camsi', 'CSS0007173' => 'camsi', 'CSS0010348' => 'camsi', 'CSS0014477' => 'camsi', 'CSS0016408' => 'camsi', 'CSS0028786' => 'camsi', 'CSS0030466' => 'camsi', 'CSS0035197' => 'camsi', 'CSS0040525' => 'camsi', 'CSS0041483' => 'camsi', 'CSS0044260' => 'camsi', 'CSS0044328' => 'camsi', 'DCAR_000642' => 'dca', 'DCAR_003073' => 'dca', 'DCAR_004605' => 'dca', 'DCAR_008341' => 'dca', 'DCAR_015060' => 'dca', 'DCAR_016034' => 'dca', 'DCAR_018075' => 'dca', 'DCAR_020171' => 'dca', 'DCAR_021717' => 'dca', 'DCAR_023179' => 'dca', 'DCAR_026163' => 'dca', 'Dinv06599' => 'din', 'Dinv20614' => 'din', 'Dinv23401' => 'din', 'Dinv36897' => 'din', 'Dinv38593' => 'din', 'Duzib068G0145' => 'dzi', 'Duzib187G0010' => 'dzi', 'Duzib187G0131' => 'dzi', 'Duzib205G0938' => 'dzi', 'Duzib205G2062' => 'dzi', 'ECA232G1732' => 'eca', 'ECA233G2751' => 'eca', 'ECA233G4871' => 'eca', 'ECA238G1961' => 'eca', 'ECA238G2834' => 'eca', 'ECA238G4159' => 'eca', 'ECA246G0147' => 'eca', 'ECA246G4765' => 'eca', 'EL10Ac2g03961' => 'bvu', 'EL10Ac2g04800' => 'bvu', 'EL10Ac5g10685' => 'bvu', 'EL10Ac5g11243' => 'bvu', 'Eucgr.B00692' => 'egr', 'Eucgr.C00618' => 'egr', 'Eucgr.J02236' => 'egr', 'Eucgr.K00124' => 'egr', 'Eucgr.K02651' => 'egr', 'FAN01G1750' => 'fan', 'FAN02G3425' => 'fan', 'FAN03G1505' => 'fan', 'FAN04G0721' => 'fan', 'FAN05G1542' => 'fan', 'FAN06G5020' => 'fan', 'FAN08G0915' => 'fan', 'FAN08G1080' => 'fan', 'FAN09G0766' => 'fan', 'FAN10G3456' => 'fan', 'FAN13G0318' => 'fan', 'FAN13G1974' => 'fan', 'FAN14G3163' => 'fan', 'FAN15G2914' => 'fan', 'FAN18G2287' => 'fan', 'FAN18G2577' => 'fan', 'FAN18G4211' => 'fan', 'FAN20G2238' => 'fan', 'FAN20G2644' => 'fan', 'FAN27G2277' => 'fan', 'FvH4_2g35151' => 'fve', 'FvH4_2g35160' => 'fve', 'FvH4_3g15571' => 'fve', 'FvH4_5g05960' => 'fve', 'FvH4_5g12770' => 'fve', 'FvH4_6g51310' => 'fve', 'FvH4_7g26900' => 'fve', 'Glyma.04G077600' => 'gma', 'Glyma.05G004300' => 'gma', 'Glyma.05G013800' => 'gma', 'Glyma.06G078700' => 'gma', 'Glyma.06G209900' => 'gma', 'Glyma.10G193900' => 'gma', 'Glyma.16G071800' => 'gma', 'Glyma.17G086400' => 'gma', 'Glyma.17G122000' => 'gma', 'Glyma.19G004800' => 'gma', 'Glyma.19G063400' => 'gma', 'Glyma.20G196600' => 'gma', 'Gohir.A01G148918' => 'ghi', 'Gohir.A05G044800' => 'ghi', 'Gohir.A05G254400' => 'ghi', 'Gohir.A06G090900' => 'ghi', 'Gohir.A07G022188' => 'ghi', 'Gohir.A07G043800' => 'ghi', 'Gohir.A07G222700' => 'ghi', 'Gohir.A09G028800' => 'ghi', 'Gohir.A09G045000' => 'ghi', 'Gohir.A10G102500' => 'ghi', 'Gohir.A11G007500' => 'ghi', 'Gohir.A12G265200' => 'ghi', 'Gohir.D05G046400' => 'ghi', 'Gohir.D05G256000' => 'ghi', 'Gohir.D06G089800' => 'ghi', 'Gohir.D07G024050' => 'ghi', 'Gohir.D07G048200' => 'ghi', 'Gohir.D07G229400' => 'ghi', 'Gohir.D09G028300' => 'ghi', 'Gohir.D09G046500' => 'ghi', 'Gohir.D10G086700' => 'ghi', 'Gohir.D11G006600' => 'ghi', 'Gohir.D12G265400' => 'ghi', 'Gorai.001G024800' => 'gra', 'Gorai.001G051400' => 'gra', 'Gorai.001G264500' => 'gra', 'Gorai.006G033000' => 'gra', 'Gorai.006G063600' => 'gra', 'Gorai.007G007900' => 'gra', 'Gorai.008G285100' => 'gra', 'Gorai.009G047800' => 'gra', 'Gorai.009G267600' => 'gra', 'Gorai.010G103700' => 'gra', 'Gorai.011G094900' => 'gra', 'GSVIVG01008228001' => 'vvi', 'HanXRQChr05g0138621' => 'han', 'HanXRQChr05g0153271' => 'han', 'HanXRQChr07g0205601' => 'han', 'HanXRQChr08g0223251' => 'han', 'HanXRQChr13g0417591' => 'han', 'HanXRQChr14g0450531' => 'han', 'HanXRQChr14g0460941' => 'han', 'HanXRQChr15g0475351' => 'han', 'HanXRQChr16g0504661' => 'han', 'HanXRQChr17g0548541' => 'han', 'HanXRQChr17g0549281' => 'han', 'Haze_07560' => 'cav', 'Haze_14732' => 'cav', 'Haze_18596' => 'cav', 'Haze_21934' => 'cav', 'Haze_22208' => 'cav', 'Hma1.2p1_0502F.1_g167740' => 'hma', 'Hma1.2p1_0603F.1_g187730' => 'hma', 'Hma1.2p1_1305F.1_g274580' => 'hma', 'Hma1.2p1_2756F.1_g328030' => 'hma', 'HPP92_003082' => 'vpl', 'HPP92_008054' => 'vpl', 'HPP92_014687' => 'vpl', 'HPP92_023392' => 'vpl', 'Lalb_Chr02g0150801' => 'lal', 'Lalb_Chr06g0175801' => 'lal', 'Lalb_Chr07g0178551' => 'lal', 'Lalb_Chr07g0182881' => 'lal', 'Lalb_Chr08g0242891' => 'lal', 'Lalb_Chr11g0064601' => 'lal', 'Lalb_Chr12g0201801' => 'lal', 'Lalb_Chr13g0302381' => 'lal', 'Lalb_Chr21g0312721' => 'lal', 'Lalb_Chr22g0360791' => 'lal', 'Lalb_Chr23g0269771' => 'lal', 'Lalb_Chr23g0274941' => 'lal', 'Lj1g0001254' => 'lja', 'Lj1g0002121' => 'lja', 'Lj1g0022824' => 'lja', 'Lj1P975T23' => 'lonja', 'Lj2g0021390' => 'lja', 'Lj2P226T37' => 'lonja', 'Lj4g0019200' => 'lja', 'Lj4g0019300' => 'lja', 'Lj5g0000097' => 'lja', 'Lj5P128T47' => 'lonja', 'Lj5P141T66' => 'lonja', 'Lj7P598T21' => 'lonja', 'Lj8C47T8' => 'lonja', 'Lj8P565T8' => 'lonja', 'Lj9P215T11' => 'lonja', 'Lj9P432T54' => 'lonja', 'Lsat_1_v5_gn_0_35501' => 'lsa', 'Lsat_1_v5_gn_2_127000' => 'lsa', 'Lsat_1_v5_gn_2_91500' => 'lsa', 'Lsat_1_v5_gn_4_112220' => 'lsa', 'Lsat_1_v5_gn_4_183360' => 'lsa', 'Lsat_1_v5_gn_4_77001' => 'lsa', 'Lsat_1_v5_gn_5_24340' => 'lsa', 'Lsat_1_v5_gn_8_9800' => 'lsa', 'Manes.01G021400' => 'mes', 'Manes.05G118400' => 'mes', 'Manes.06G108600' => 'mes', 'Manes.06G131000' => 'mes', 'Manes.14G039100' => 'mes', 'Manes.15G149800' => 'mes', 'Manes.16G076500' => 'mes', 'Manes.17G112800' => 'mes', 'Mapoly0048s0029' => 'mpo', 'Mapoly0109s0031' => 'mpo', 'MBI04_g06987_MAGBIO' => 'mbi', 'MBI04_g33724_MAGBIO' => 'mbi', 'MBI04_g41759_MAGBIO' => 'mbi', 'MBI10_g08548_MAGBIO' => 'mbi', 'MBI16_g23849_MAGBIO' => 'mbi', 'MD01G1176900' => 'mdo', 'MD04G1057600' => 'mdo', 'MD06G1051200' => 'mdo', 'MD06G1169100' => 'mdo', 'MD06G1210400' => 'mdo', 'MD07G1248300' => 'mdo', 'MD08G1109100' => 'mdo', 'MD09G1028000' => 'mdo', 'MD14G1174400' => 'mdo', 'MD14G1221100' => 'mdo', 'MD17G1029500' => 'mdo', 'MD17G1068400' => 'mdo', 'Medtr1g090250' => 'mtr', 'Medtr3g109190' => 'mtr', 'Medtr4g105200' => 'mtr', 'Medtr4g111770' => 'mtr', 'Medtr6g005040' => 'mtr', 'Medtr7g033775' => 'mtr', 'MELO3C002289.2' => 'cme', 'MELO3C005464.2' => 'cme', 'MELO3C009988.2' => 'cme', 'MELO3C011123.2' => 'cme', 'MELO3C017282.2' => 'cme', 'MELO3C017642.2' => 'cme', 'MELO3C021576.2' => 'cme', 'Migut.A00172' => 'egut', 'Migut.A01025' => 'egut', 'Migut.F00529' => 'egut', 'Migut.H00082' => 'egut', 'Migut.J00358' => 'egut', 'Migut.K01392' => 'egut', 'Migut.L01615' => 'egut', 'Migut.O00137' => 'egut', 'Nitab4.5_0000025g0420' => 'nta', 'Nitab4.5_0000185g0100' => 'nta', 'Nitab4.5_0000600g0090' => 'nta', 'Nitab4.5_0001432g0070' => 'nta', 'Nitab4.5_0002206g0060' => 'nta', 'Nitab4.5_0002624g0010' => 'nta', 'Nitab4.5_0002682g0100' => 'nta', 'Nitab4.5_0002683g0030' => 'nta', 'Nitab4.5_0003716g0070' => 'nta', 'Nitab4.5_0005021g0030' => 'nta', 'Nitab4.5_0005418g0020' => 'nta', 'Nitab4.5_0006802g0010' => 'nta', 'Nitab4.5_0006805g0020' => 'nta', 'Nitab4.5_0007105g0030' => 'nta', 'Nitab4.5_0009301g0010' => 'nta', 'Nitab4.5_0009528g0030' => 'nta', 'Nitab4.5_0010114g0020' => 'nta', 'Nitab4.5_0010435g0010' => 'nta', 'Nn1g00854' => 'nnu', 'Nn3g16753' => 'nnu', 'Nn3g17697' => 'nnu', 'Nn4g22652' => 'nnu', 'Nn8g39009' => 'nnu', 'Oeu006088.1' => 'oeu', 'Oeu006820.1' => 'oeu', 'Oeu006822.1' => 'oeu', 'Oeu016163.1' => 'oeu', 'Oeu021666.1' => 'oeu', 'Oeu024712.1' => 'oeu', 'Oeu027135.1' => 'oeu', 'Oeu038822.1' => 'oeu', 'Oeu063474.1' => 'oeu', 'Os01g0643900' => 'osa', 'Os03g0699000' => 'osa', 'Os04g0546500' => 'osa', 'Os05g0576700' => 'osa', 'Os06g0473800' => 'osa', 'Os09g0324000' => 'osa', 'Peaxi162Scf00013g00094' => 'pax', 'Peaxi162Scf00015g00065' => 'pax', 'Peaxi162Scf00089g00152' => 'pax', 'Peaxi162Scf00102g00813' => 'pax', 'Peaxi162Scf00129g01528' => 'pax', 'Peaxi162Scf00255g00091' => 'pax', 'Peaxi162Scf00260g00056' => 'pax', 'Peaxi162Scf00271g00056' => 'pax', 'Peaxi162Scf00304g00108' => 'pax', 'Peaxi162Scf00700g00422' => 'pax', 'PGR044G0588' => 'pgr', 'PGR044G2217' => 'pgr', 'PGR083G2122' => 'pgr', 'PGR142G3461' => 'pgr', 'PGR142G4011' => 'pgr', 'PGSC0003DMG400004072' => 'stu', 'PGSC0003DMG400005620' => 'stu', 'PGSC0003DMG400012628' => 'stu', 'PGSC0003DMG400018176' => 'stu', 'PGSC0003DMG400021587' => 'stu', 'PGSC0003DMG400024152' => 'stu', 'PGSC0003DMG400026259' => 'stu', 'PGSC0003DMG402025462' => 'stu', 'Phvul.003G177800' => 'pvu', 'Phvul.007G138300' => 'pvu', 'Phvul.008G144500' => 'pvu', 'Phvul.009G103600' => 'pvu', 'Potri.001G080000' => 'ptr', 'Potri.001G345800' => 'ptr', 'Potri.003G150600' => 'ptr', 'Potri.006G234900' => 'ptr', 'Potri.012G059400' => 'ptr', 'Potri.012G083400' => 'ptr', 'Potri.015G081901' => 'ptr', 'Potri.017G071800' => 'ptr', 'Potri.018G057800' => 'ptr', 'Potri.T125308' => 'ptr', 'Pp3c1_28680' => 'ppa', 'Pp3c2_9940' => 'ppa', 'Pp3c6_6400' => 'ppa', 'Prupe.1G443700' => 'ppe', 'Prupe.2G272200' => 'ppe', 'Prupe.3G290700' => 'ppe', 'Prupe.5G167900' => 'ppe', 'Prupe.5G216500' => 'ppe', 'Psat1g055160' => 'psa', 'Psat1g210440' => 'psa', 'Psat3g163120' => 'psa', 'Psat4g044680' => 'psa', 'Psat5g024640' => 'psa', 'Psat5g107320' => 'psa', 'Psat6g171200' => 'psa', 'PSO017G5620' => 'pso', 'PSO017G6101' => 'pso', 'PSO063G0492' => 'pso', 'PSO063G5652' => 'pso', 'PSO339G2444' => 'pso', 'PSO384G3992' => 'pso', 'PSO478G1041' => 'pso', 'PSO782G4143' => 'pso', 'PSO832G3184' => 'pso', 'QL02p074868' => 'qlo', 'QL05p063059' => 'qlo', 'QL09p027843' => 'qlo', 'QL10p008051' => 'qlo', 'QL10p023095' => 'qlo', 'RcHm_v2.0_Chr1g0373571' => 'rch', 'RcHm_v2.0_Chr2g0172931' => 'rch', 'RcHm_v2.0_Chr6g0306781' => 'rch', 'RcHm_v2.0_Chr6g0306791' => 'rch', 'RcHm_v2.0_Chr7g0184461' => 'rch', 'RcHm_v2.0_Chr7g0192881' => 'rch', 'Rhsim03G0160900' => 'rsi', 'Rhsim08G0051300' => 'rsi', 'Rhsim08G0175900' => 'rsi', 'Rhsim09G0189400' => 'rsi', 'Rhsim11G0049200' => 'rsi', 'Rhsim12G0166800' => 'rsi', 'RhsimUnG0106300' => 'rsi', 'Sabra01G0057300' => 'sbr', 'Sabra06G0183300' => 'sbr', 'Sabra12G0042600' => 'sbr', 'Sabra15G0076100' => 'sbr', 'Sabra15G0105500' => 'sbr', 'Sabra16G0224800' => 'sbr', 'SalBow1G6321' => 'sbo', 'SalBow1G7619' => 'sbo', 'SalBow3G3569' => 'sbo', 'SalBow3G4276' => 'sbo', 'SalBow6G3536' => 'sbo', 'SalBow6G4436' => 'sbo', 'Sc03g0007530' => 'sci', 'Sc04g0003780' => 'sci', 'Sc04g0003940' => 'sci', 'Sc06g0000870' => 'sci', 'Sc16g0003220' => 'sci', 'Sc22g0000890' => 'sci', 'Sed0002590' => 'sed', 'Sed0003039' => 'sed', 'Sed0006617' => 'sed', 'Sed0014798' => 'sed', 'Sed0015398' => 'sed', 'Sed0022567' => 'sed', 'Sed0025483' => 'sed', 'SEGI_13309' => 'sgi', 'SEGI_16623' => 'sgi', 'SEGI_28221' => 'sgi', 'SEGI_29139' => 'sgi', 'SEGI_35607' => 'sgi', 'SEGI_38120' => 'sgi', 'SEGI_39937' => 'sgi', 'SGA_v2.0_scaffold104G30202' => 'sas', 'SGA_v2.0_scaffold135G34900' => 'sas', 'SGA_v2.0_scaffold199G41233' => 'sas', 'SGA_v2.0_scaffold224G42985' => 'sas', 'SGA_v2.0_scaffold25G10809' => 'sas', 'SGA_v2.0_scaffold44G16579' => 'sas', 'SGA_v2.0_scaffold56G19908' => 'sas', 'SGA_v2.0_scaffold94G28615' => 'sas', 'SHI17177' => 'shi', 'SHI18801' => 'shi', 'SHI18937' => 'shi', 'SMO111G0005' => 'smo', 'SMO115G0260' => 'smo', 'SMO140G0068' => 'smo', 'SMO197G0099' => 'smo', 'SMO347G0367' => 'smo', 'SMO351G0238' => 'smo', 'SMO351G0269' => 'smo', 'SMO364G0339' => 'smo', 'Solyc02g086490.3' => 'sly', 'Solyc03g112440.1' => 'sly', 'Solyc03g119820.1' => 'sly', 'Solyc06g034040.1' => 'sly', 'Solyc06g060840.1' => 'sly', 'Solyc06g069260.1' => 'sly', 'Solyc08g066040.1' => 'sly', 'Solyc08g078160.3' => 'sly', 'Solyc12g010920.2' => 'sly', 'Sopen02g031210' => 'spe', 'Sopen03g031520' => 'spe', 'Sopen03g038680' => 'spe', 'Sopen06g010720' => 'spe', 'Sopen06g020990' => 'spe', 'Sopen06g026520' => 'spe', 'Sopen08g019700' => 'spe', 'Sopen12g006280' => 'spe', 'Sp1g35900' => 'spa', 'Sp2g16790' => 'spa', 'Sp3g00480' => 'spa', 'Sp3g16650' => 'spa', 'Sp4g05730' => 'spa', 'Sp6g13410' => 'spa', 'Sp6g35300' => 'spa', 'Sp6g35320' => 'spa', 'Sp7g01500' => 'spa', 'Sp7g23140' => 'spa', 'TAR371G0521' => 'tar', 'TAR371G1184' => 'tar', 'TAR374G0719' => 'tar', 'TAR383G0309' => 'tar', 'TAR622G1246' => 'tar', 'TAR626G0937' => 'tar', 'TAR626G1162' => 'tar', 'TAR629G2157' => 'tar', 'TAR629G3054' => 'tar', 'TAR636G2754' => 'tar', 'THA.LOC104802395' => 'tha', 'THA.LOC104805374' => 'tha', 'THA.LOC104811538' => 'tha', 'THA.LOC104818593' => 'tha', 'THA.LOC104819676' => 'tha', 'THA.LOC104821850' => 'tha', 'THA.LOC104825056' => 'tha', 'Thecc.03G022400' => 'tca', 'Thecc.03G027500' => 'tca', 'Thecc.03G148200' => 'tca', 'Thecc.04G016100' => 'tca', 'Thecc.09G049000' => 'tca', 'Thhalv10002154m.g' => 'esa', 'Thhalv10005366m.g' => 'esa', 'Thhalv10011990m.g' => 'esa', 'Thhalv10014500m.g' => 'esa', 'Thhalv10015089m.g' => 'esa', 'Thhalv10015579m.g' => 'esa', 'Thhalv10015754m.g' => 'esa', 'Thhalv10021571m.g' => 'esa', 'Thhalv10021947m.g' => 'esa', 'Thhalv10027215m.g' => 'esa', 'Thhalv10028039m.g' => 'esa', 'TPR.G10792' => 'tpr', 'TPR.G1123' => 'tpr', 'TPR.G12313' => 'tpr', 'TPR.G13404' => 'tpr', 'TPR.G14086' => 'tpr', 'TPR.G26761' => 'tpr', 'TPR.G37564' => 'tpr', 'TWI14G1264' => 'twi', 'TWI15G0225' => 'twi', 'TWI23G0546' => 'twi', 'TWI23G0903' => 'twi', 'TWI36G1546' => 'twi', 'TWI56G1342' => 'twi', 'TWI63G0923' => 'twi', 'TWI81G1081' => 'twi', 'unitig_22.g6235' => 'ugi', 'unitig_32.g10672' => 'ugi', 'unitig_37.g12425' => 'ugi', 'unitig_60.g25806' => 'ugi', 'unitig_61.g26182' => 'ugi', 'unitig_746.g26754' => 'ugi', 'unitig_8.g3017' => 'ugi', 'unitig_88.g27779' => 'ugi', 'vmacro09924' => 'vma', 'VMungo1215G1355' => 'vmu', 'VMungo1309G1519' => 'vmu', 'VMungo1383G3142' => 'vmu', 'Zm00001eb000200' => 'zma', 'Zm00001eb053890' => 'zma', 'Zm00001eb074940' => 'zma', 'Zm00001eb158660' => 'zma', 'Zm00001eb216880' => 'zma', 'Zm00001eb344420' => 'zma', 'Zm00001eb382400' => 'zma' ) $gf_id = 'HOM05D000805' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000805' ) $data_identifier = 'HOM05D000805' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 3, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 16, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 5, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 23, 'gra' => (int) 11, 'vvi' => (int) 1, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 8, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 1, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1